The folders I built capture my software development process. My turn around time went from 2 weeks to 2 days. But it was still kinda messy. The problem it had was the context.md mixes the process in with the inputs and outputs. The context stays relatively stable, but the results change each time it's run. So I moved the context files into a root folder called 'engine'. All I had to do was update the routing and it got much cleaner!